SNP Profiles matching SPEC 54 /1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
1._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
2._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
3._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
4._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
5._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
6._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
7._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
8._SPEC_54_/1	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
9._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
10._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
11._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
12._GC-05-063-2-14	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
13._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
14._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
15._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
16._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
17._GC-05-162-4-15	GG	TT	AA	TT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT
18._RUQ_50	_	_	AA	TT	CC	AA	CC	AA	TT	AA	_	AA	CC	TT
19._SPEC_54_/1	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
20._GC-05-063-2-14	GG	TT	AA	TT	CT	AA	CC	AA	TT	AA	GG	AA	CC	TT
21._RUQ_50	GG	TT	AA	GT	CC	AA	CC	AA	TT	AA	GG	AA	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
1._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
2._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
3._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
4._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
5._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
6._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
7._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
8._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
9._GC-05-063-2-14	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
10._GC-05-063-2-14	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
11._GC-05-063-2-14	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
12._GC-05-063-2-14	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
13._GC-05-162-4-15	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
14._GC-05-162-4-15	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
15._GC-05-162-4-15	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
16._GC-05-162-4-15	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
17._GC-05-162-4-15	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
18._RUQ_50	GG	AA	CC	_	GG	GG	CC	_	_	_	_	AA	CC	_
19._SPEC_54_/1	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
20._GC-05-063-2-14	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG
21._RUQ_50	GG	AA	CC	AA	GG	GG	CC	TT	GG	AA	CC	AA	CC	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
1._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
2._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
3._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
4._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
5._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
6._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
7._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
8._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
9._GC-05-063-2-14	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
10._GC-05-063-2-14	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
11._GC-05-063-2-14	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
12._GC-05-063-2-14	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
13._GC-05-162-4-15	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
14._GC-05-162-4-15	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
15._GC-05-162-4-15	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
16._GC-05-162-4-15	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
17._GC-05-162-4-15	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
18._RUQ_50	_	_	_	TT	_	_	CT	CC	AA	_	X_X	X_X	X_X	X_X
19._SPEC_54_/1	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
20._GC-05-063-2-14	AA	TT	CC	TT	TT	TT	CT	CC	AA	CC	X_X	X_X	X_X	X_X
21._RUQ_50	AA	TT	CC	TT	TT	TT	CT	CC	AG	CC	X_X	X_X	X_X	X_X

Input profile: SPEC_54_/1

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Mars Center for Cocoa Science, Brazil

Location: 5214 1 > FP

Dapeng Zhang, 2016

1._SPEC_54_/1

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5214 2 > FP

Dapeng Zhang, 2016

2._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 3 > FP

Dapeng Zhang, 2016

3._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 4 > FP

Dapeng Zhang, 2016

4._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 2

Dapeng Zhang, 2016

5._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 3

Dapeng Zhang, 2016

6._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 4

Dapeng Zhang, 2016

7._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 5

Dapeng Zhang, 2016

8._SPEC_54_/1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5415 1 > FP

Dapeng Zhang, 2016

9._SPEC_54_/1 GC-05-063-2-14

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

10._SPEC_54_/1 GC-05-063-2-14

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

11._SPEC_54_/1 GC-05-063-2-14

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._SPEC_54_/1 GC-05-063-2-14

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

13._SPEC_54_/1 GC-05-162-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

14._SPEC_54_/1 GC-05-162-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._SPEC_54_/1 GC-05-162-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

16._SPEC_54_/1 GC-05-162-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

17._SPEC_54_/1 GC-05-162-4-15

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._SPEC_54_/1 RUQ_50

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._SPEC_54_/1

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5214 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

20._SPEC_54_/1 GC-05-063-2-14

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

21._SPEC_54_/1 RUQ_50

97.4 %
38 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1414	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484	38	TcSNP1520